Resources

A curated list of tools, software, dashboards, and data sources for analyzing and visualizing SARS-CoV-2 data.

Internally Developed Tools

Assigns Pango lineages to SARS-CoV-2 genome sequences.

A tool for SNP-based calling of variants of concern.

Generates reports for outbreak investigations.

Identifies and flags clusters based on configurable statistics.

Dashboard for viewing information about SARS-CoV-2 variants.

Overview of SARS-CoV-2 variants and interesting mutations.

Interactive dashboard for SARS-CoV-2 variants with sophisticated queries.

Dashboard displaying information about the general spread of Covid-19.

Interactive visualisation of the Pango lineage system.

Data visualisation tool for exploring SARS-CoV-2 variants and mutations.

Viral genome sequence analysis and quality control.

Enables real-time phylogenetics for the SARS-CoV-2 pandemic using Vision Transformers.

A web application version of the Pangolin Tool.

Powerful, interactive tools for exploring virus data.

Finds the most similar samples from public sequence databases.

Global data repository for SARS-CoV-2 genomes.

High quality, downloadable data set of SARS-CoV-2 genomes.

Large number of data sets and bioinformatics tools for SARS-CoV-2.